BIO 178/179 MARINE BIOLOGY SYLLABUS 2013
Prof. Paul H. Yancey, Whitman College

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TOPIC

GRADING

% of grade

2013 DATE

I) Environmental Factors; II) Ecology

Exam I

20%

Feb. 8

III) Marine Life; IV) Benthic Biology--General and Intertidal
25%
Mar. 4

** FIELD TRIP ($350 fee) -- Biol 179

REPORTS

[separate course]

Mar. 10-16

IV) Benthic Biology: Subtidal; V) Pelagic: Plankton; Nekton (whales, fishes, etc.)

Exam III

25%

Apr. 15

VI) Deep Sea ; VII) Reefs; VIII) Human Interactions

FINAL EXAM

30%

May 9

GRADING: 90-100% A; 80-89.9% B; 70-79.9% C; etc. Plus/minus cutoffs at x.33 and x.67%
Lectures 1-5:
Scroll down
Lectures 6-11 Lectures 12-19 Lectures 20-31 Lectures 32-41

CURRENT RESEARCH NEWS: EUREKA ALERT NEWS in OCEANOGRAPHY

Lecture #1

Jan. 23

OVERVIEW:
__Brief History of Marine Sciences
from 1800s to the present; current and future issues
__Limitations to Marine Research; and Methods including spacecraft, submersibles and remote sensors

TOPIC LINKS: --Overfishing
--MBARI and new deep-sea sensor observatory MARS
--See the The latest satellite images of earth at this NOAA site.
--CENSUS OF MARINE LIFE
--TOPP: Tagging of Pacific Pelagics/Predators: satellite tracking technology for migratory marine animals
--NEPTUNE/VENUS sensor networks; W. CANADA
--Sound in the Sea: learn about hydrophone arrays; hear sounds of earthquakes and whales and of mystery sounds (deep-sea monsters?? click for CNN story) from the arrays!
--Nereus hybrid sub

Lectures #2-5

Jan. 24-Feb. 1

I. ENVIRONMENTAL FACTORS:

TOPIC LINKS: --TECTONICS of the terrible HAITI EARTHQUAKE
--New initiatives in Climate Change training/research (Whitman !)
--This Dynamic Earth--USGS site on Plate Tectonics
Animations shown in class: 1) Seafloor spreading ; 2) Seafloor-->Land subduction; 3) India colliding with Asia; 4) Hotspot animation
--Tectonic animations at PBS Savage Earth
--JPL's Seafloor Mapping by Satellite Altimetry and How Satellite mapping works!
--New Millenium Observatory (NeMO) : 3d Virtual Reality explorations of Juan de Fuca vents !
--Seamounts and their lifeforms explored for the first time (2002-03): Davidson Seamount off California and a seamount chain off New England. Videos and pictures at these websites!
--Wave animation machine at PBS Savage Seas
--Coriolis effect animations
--PBS Savage Earth -- tsunami animation
--An animation of wind-belt cells
--Thermohaline currents animation
--Animation of Tides from Earth-Moon rotation
--Tide Calculator--OCEAN CHLOROPHYLL: US Govt satellite monitoring of the world's ecological features. To see current and archived satellite maps of ocean color (chlorophyll), go to the Ocean Color site and click on LEVEL 1 and 2 or on LEVEL 3 BROWSER links.
--WRI's Interactive MAP OF EUTROPHIC DEAD ZONES
--A primer on IRON FERTILIZATION of the OCEANS

Lectures #6-7

Feb. 4-6

II. MARINE ECOLOGY
__A. POPULATION; __B. COMMUNITY __C. ECOSYSTEMS--basic features
Quantitative measurements: Abundance, Richness, Diversity

TOPIC LINKs: SeaWIFS Homepage --US Govt satellite monitoring of the world's ecological features. To see current and archived satellite maps of ocean color (chlorophyll), go to the Ocean Color site and click on LEVEL 1 and 2 or on LEVEL 3 BROWSER links.
--Overview of Global warming as seen in ice and snow changes
--NRDC Global Warming Site
--See the The latest satellite images of earth's weather at this NOAA site.

FEB. 8

EXAM I

TOPIC LINKS: Review Outline!
--Old Exam HERE

--Exam I RESULTS this year

Lectures #7-10
Feb. 6-18

III. ORGANISMAL Biology/ Marine LIFE

TOPIC LINKS: Census of Marine Life
--Tree of Life Page
--Microbe-of-the-Month Pages with biofilm and marine bacteria
--List of Marine Phyla
--Crab-Claw animation at U. Alberta
--Marine Genomics research and Ocean Genome Legacy

Lectures #11-14

Feb. 20-Mar. 1

IV. BENTHIC BIOLOGY--GENERAL & INTERTIDAL

Videos of an octopod using a coconut for armor; the Indonesian mimic octopod ; an octopod camouflaged as algae;
--Mantis Shrimp: Sheila Patek, UCB, talks about her discoveries about this amazing kick-boxing animal
--Snapping Shrimp: the biophysics of a unique ambush technique
--Cone shells and their toxins with videos
--Crab-Claw animation at U. Alberta
--Octopus-shark ambush at Seattle Aquarium

Mar. 4

EXAM II

TOPIC LINKS: Review Outline!
--Old Exam here

Lecture #15
Mar. 6

IV. BENTHIC BIOLOGY: SUBTIDAL KELP, Polar ICE

TOPIC LINK: Guide to Life under the Antarctic Ice--great photos

FIELD TRIP!
Mar. 10-16

 

 

FIELD TRIP!--Schedule for the 2009 Trip
Lectures:
V. PELAGIC BIOLOGY
-- PLANKTON Adaptations

TOPIC LINKs: --ORCA FM--live broadcast of Pacific NW orcas; other orca information

Lectures #16-17

Mar. 25-27

PELAGIC BIOLOGY: PLANKTON

Lectures #17-21
Mar. 27-Apr. 12

PELAGIC BIOLOGY-- NEKTON and SEABIRDS

TOPIC LINKs: --Humpbacks' bubblenetting
--Airborne White Sharks!
-
-Penguins feeding under the ice with Crittercam!
--Dolphins' unique feeding behaviors: VIDEOS of 1) corralling in Florida; and 2) Surfing, beaching (Australia)
--The Great Turtle race
--TOPP.org
--The Center for Cetacean Research and Conservation, including Songs of the Humpback whale
--Sounds of the Minke Whale (recently discovered)--download the whale's mysterious "Star Wars" sound
--Dolphin and Whale sounds with sound files to download
--The Dolphin Institute--learn about social adaptations and language abilities in dolphins
--Blue Whale photos underwater!
--Gail Patricelli, a Whitman Biology-Art grad: her robotic-bird test of bird courtship behavior (not marine, but very cool!)

Apr. 15

EXAM III

TOPIC LINK: Review OUTLINE!
--Old Exam HERE
--Exam II RESULTS

Lectures #22-23

Apr. 17-19

PELAGIC BIOLOGY--DEEP PELAGIC:

TOPIC LINKS: Karen Jacobsen's art
Bioluminescence page - information on deepsea biological light production
__Prof. Yancey's pictures of mesopelagic fishes

Lectures #23-25
Apr. 19-24

BENTHIC BIOLOGY-- DEEP BENTHIC --SEA FLOOR:

TOPIC LINKS: NOAA Ocean Explorer site --recent expeditions and videos of deep-sea vents, volcanoes, etc.
The Monterey Bay Aquarium Research Inst.
--NOAA Monitors Eruption off Oregon coast: Apr. 2001--ASSIGNED reading
--COLD SEEPS: for lots of detail and pictures, see the MBARI SITE or PENN-STATE SITE (both excellent)
--HYDROTHERMAL VENTS: see U.W.'s Exploraquarium Vents Site
OR see the Office of Naval Research Vents site for animations!
--High-Pressure Effects
--Virtual Tour of Rift Valley at UCSB
--A Manganese Nodule picture; and --The Manganese nodule web site
--Hydrocarbon-seep tubeworm in the Gulf of Mexico--the oldest known invertebrates? See NY Times article
--Prof. Yancey's Deep-Sea Pages for pictures of bathyal and abyssal animals (optional)
--Prof. Yancey's New Deep-Sea Research Pages for the latest deepsea news stories and research (optional)
--Weird deepsea squid discovered (2001)

Lectures #26-27

Apr. 29-May 1

IV. BENTHIC BIOLOGY--CORAL REEFS

TOPIC LINKS: --Bacterial diseases on reefs
--The Reef Relief Page
--The Reef Education Network
--NOAA's Reef Monitoring program

Lectures #27-28

May 1-6

VI. HUMANS INTERACTIONS

TOPIC LINKS: _NEWS on FISHERIES at Christian Science Monitor
-- Overfishing
--Fisheries monitoring on an offshore bank
--Mediterranean Tuna face extinction (2002

TOPIC LINKS: The Oceans in Trouble
--Fate of DOM and the Greenhouse effect
--Rogue Algae--invaders wipe out locals
--Fisheries monitoring on an offshore bank
--Mediterranean Tuna face extinction (2002)

May 9

FINAL EXAM

TOPIC LINK: Review OUTLINE!
--Old Exam with answers--HERE.
__ FINAL EXAM RESULTS and ANSWERS

GO TO Prof. Yancey's Home Page; GO TO Prof. Yancey's Marine Biology Page