BIO 178/179 MARINE BIOLOGY SYLLABUS 2009
Prof. Paul H. Yancey, Whitman College

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TOPIC

GRADING

% of grade

DATE

I) Environmental Factors; II) Ecology

Exam I

18%

Feb. 9

III) Marine Life; IV) Benthic Biology--General and Intertidal
26%
Mar. 9

** FIELD TRIP ($200 fee) -- Biol 179

REPORTS

[separate course]

Mar. 15-21

IV) Benthic Biology: Subtidal; Coral Reefs; Deep Sea; V) Pelagic: Plankton

Exam III

24%

Apr. 9

V) Pelagic--Nekton; VI) Pelagic--Deep ; VII) Human Interactions

FINAL EXAM

32%

May 16

GRADING: 90-100% A; 80-89.9% B; 70-79.9% C; etc. Plus/minus cutoffs at x.33 and x.67%
Lectures 1-5:
Scroll down
Lectures 6-11 Lectures 12-19 Lectures 20-31 Lectures 32-41

CURRENT RESEARCH NEWS: EUREKA ALERT NEWS in OCEANOGRAPHY

Lecture #1

Jan. 21

OVERVIEW:
__Brief History of Marine Sciences
from 1800s to the present; current and future issues
__Limitations to Marine Research; and Methods including spacecraft, submersibles and remote sensors

TOPIC LINKS: Overfishing
--MBARI and new deep-sea sensor observatory MARS
--See the The latest satellite images of earth at this NOAA site.
--SeaWIFS Homepage --US Govt satellite monitoring of the world's ecological features. To see current and archived satellite maps of ocean color (chlorophyll), go to the Ocean Color site and click on LEVEL 1 and 2 or on LEVEL 3 BROWSER links.

For Lectures 1 and 2:
--CENSUS OF MARINE LIFE
--TOPP: Tagging of Pacific Pelagics: new satellite tracking technology for migratory marine animals
--Sound in the Sea: learn about hydrophone arrays; hear sounds of earthquakes and whales and of mystery sounds (deep-sea monsters?? click for CNN story) from the arrays!

Lectures #2-3

Jan. 23-26

I. ENVIRONMENTAL FACTORS:
__A. TECTONIC: plate boundaries and hot spots; seamounts
__B. SURFACES: 1. Rock and 2. Sediments--Lithogenous, Biogenous;
____& 3. Hydrogenous--hydrothermal metal sulfide chmineys, manganese nodules, methane hydrates

TOPIC LINKS: --Animations shown in class: 1) Seafloor spreading ; 2) Seafloor-->Land subduction; 3) India colliding with Asia; 4) Hotspot animation
--This Dynamic Earth--USGS site on Plate Tectonics
--Tectonic animations at PBS Savage Earth
--JPL's Seafloor Mapping by Satellite Altimetry and How Satellite mapping works!
--New Millenium Observatory (NeMO) : 3d Virtual Reality explorations of Juan de Fuca vents !
--Seamounts and their lifeforms explored for the first time (2002-03): Davidson Seamount off California and a seamount chain off New England. Videos and pictures at these websites!

Lectures #3-5

Jan. 26-30

I. ENVIRONMENTAL FACTORS:
__C. MOVEMENTS: 1. Waves 2. Currents
__D. Other PHYSICAL Factors: 1. Light 2. Temperature; 3. Density; 4. Pressure

TOPIC LINKS:--Wave animation machine at PBS Savage Seas
--Coriolis effect animations
--Tsunami animation at Office of Naval Research and at PBS Savage Earth
--Animation of Gulf Stream and temperature
--Animation of wind-belt cells
--Thermohaline currents animation
--Animation of Tides from Earth-Moon rotation
--Tide Calculator

Lectures 6-7
Feb. 2-4

I. ENVIRONMENTAL FACTORS:
__E. CHEMICAL Factors
__F. BIOTIC Factors: types of interactions

TOPIC LINKS:
--A primer on IRON FERTILIZATION of the OCEANS

Lecture #8

Feb. 6

II. MARINE ECOLOGY
__A. POPULATION; __B. COMMUNITY __C. ECOSYSTEMS--basic features
Quantitative measurements: Abundance, Richness, Diversity

TOPIC LINKs: SeaWIFS Homepage --US Govt satellite monitoring of the world's ecological features. To see current and archived satellite maps of ocean color (chlorophyll), go to the Ocean Color site and click on LEVEL 1 and 2 or on LEVEL 3 BROWSER links.
--Overview of Global warming as seen in ice and snow changes
--NRDC Global Warming Site
--See the The latest satellite images of earth's weather at this NOAA site.

FEB. 9

EXAM I

TOPIC LINKS: Review Outline!
--Old Exam with answers--from EXPLORER, use PRINT PREVIEW and PAGE SETUP to fit these to 1 page each!
--Old Exam pg 1; Old Exam pg 2; Old Exam pg 3; Old Exam article

--Exam I RESULTS this year

Lecture #9-12
Feb. 11-20

III. ORGANISMAL Biology/ Marine LIFE

TOPIC LINKS: Census of Marine Life
--Tree of Life Page
--Microbe-of-the-Month Pages with biofilm and marine bacteria
--List of Marine Phyla
--Marine Genomics research and Ocean Genome Legacy

Lectures #13-14

Feb. 23-25

IV. BENTHIC BIOLOGY--GENERAL

TOPIC LINKs:
--Snapping Shrimp: the biophysics of a unique ambush technique
--Cone shells and their toxins with videos
--Crab-Claw animation at U. Alberta

Lectures #15-18
Feb. 27-Mar. 6

IV. BENTHIC BIOLOGY: INTERTIDAL

TOPIC LINK:

Mar. 9

EXAM II

TOPIC LINKS: Review Outline!
--Old Exam with answers--from EXPLORER, use PRINT PREVIEW and PAGE SETUP to fit these to 1 page each!
--Old Exam pg 1; Old Exam pg 2; Old Exam pg 3;

Lectures #19-20
Mar. 11-13

IV. BENTHIC BIOLOGY: Estuaries and SUBTIDAL

TOPIC LINK: Guide to Life under the Antarctic Ice--great photos

FIELD TRIP!
& Lecture #21
Mar. 22-28

 

 

FIELD TRIP!--Schedule for the 2009 Trip
Lectures:
V. PELAGIC BIOLOGY
-- PLANKTON Adaptations

TOPIC LINKs: --ORCA FM--live broadcast of Pacific NW orcas; other orca information

Lectures #22-23

Mar 30-Apr. 1

PELAGIC BIOLOGY: PLANKTON

Lectures #24-30
Apr. 1-22

PELAGIC BIOLOGY-- NEKTON and SEABIRD Adaptations

TOPIC LINKs: Whale/Dolphin NEWS
--Robotuna!
--Bewley's Turbulence Research
--Hydrodynamic Flow Movies--ITS Corp.
--The Pelagic Shark Research Foundation showing ampullae picture ; shark teeth picture here
--The physiology of the icefish
--Echolocation animation at Office of Naval Research
--Fishbase: A Catalog of Fish Diversity
--CephBase--information and pictures of cephalopods of the world
--The Center for Cetacean Research and Conservation, including Songs of the Humpback whale
--Sounds of the Minke Whale (recently discovered)--download the whale's mysterious "Star Wars" sound
--Dolphin and Whale sounds with sound files to download
--The Dolphin Institute--learn about social adaptations and language abilities in dolphins
--Blue Whale photos underwater!
--The Elephant Seal pages with Live Seal beach Camera!
--Gail Patricelli, a Whitman Biology-Art grad: her robotic-bird test of bird courtship behavior (not marine, but very cool!)

Apr. 15

EXAM III

TOPIC LINK: Review OUTLINE!
--Old Exam with answers--from EXPLORER, use PRINT PREVIEW and PAGE SETUP to fit these to 1 page each!
--Old Exam pg 1; Old Exam pg 2; Old Exam pg 3;
--Exam II RESULTS

Lectures #31-32

Apr. 22-24

PELAGIC BIOLOGY--DEEP PELAGIC:

TOPIC LINKS: Bioluminescence page - information on deepsea biological light production
__Prof. Yancey's pictures of mesopelagic fishes

Lectures #33-35
Apr. 27-May 1

BENTHIC BIOLOGY--The DEEP SEA FLOOR:

TOPIC LINKS: NOAA Ocean Explorer site --recent expeditions and videos of deep-sea vents, volcanoes, etc.
The Monterey Bay Aquarium Research Inst.
--NOAA Monitors Eruption off Oregon coast: Apr. 2001--ASSIGNED reading
--COLD SEEPS: for lots of detail and pictures, see the MBARI SITE or PENN-STATE SITE (both excellent)
--HYDROTHERMAL VENTS: see U.W.'s Exploraquarium Vents Site
OR see the Office of Naval Research Vents site for animations!
--High-Pressure Effects
--Virtual Tour of Rift Valley at UCSB
--A Manganese Nodule picture; and --The Manganese nodule web site
--Hydrocarbon-seep tubeworm in the Gulf of Mexico--the oldest known invertebrates? See NY Times article
--Prof. Yancey's Deep-Sea Pages for pictures of bathyal and abyssal animals (optional)
--Prof. Yancey's New Deep-Sea Research Pages for the latest deepsea news stories and research (optional)
--Weird deepsea squid discovered (2001)

Lectures #36-37

May 4-6

IV. BENTHIC BIOLOGY--CORAL REEFS

TOPIC LINKS: --Bacterial diseases on reefs
--The Reef Relief Page
--The Reef Education Network
--NOAA's Reef Monitoring progr

Lectures #38-39

May 8-11

VI. HUMANS INTERACTIONS

TOPIC LINKS: _NEWS on FISHERIES at Christian Science Monitor
-- Overfishing
--Fisheries monitoring on an offshore bank
--Mediterranean Tuna face extinction (2002

TOPIC LINKS: The Oceans in Trouble
--Fate of DOM and the Greenhouse effect
--Rogue Algae--invaders wipe out locals
--Fisheries monitoring on an offshore bank
--Mediterranean Tuna face extinction (2002)

May 16

FINAL EXAM

TOPIC LINK: Review OUTLINE!
--Old Exam with answers--from EXPLORER, use PRINT PREVIEW and PAGE SETUP to fit these to 1 page each!
-- Final pg 1; Final pg 2; Final pg 3; Sample pg 4 ; Final pg 5; Final pg 6.
__ FINAL EXAM RESULTS and ANSWERS

GO TO Prof. Yancey's Home Page; GO TO Prof. Yancey's Marine Biology Page